Projects
Name
Host tropism of emerging viral infections
University
Taiwan (FMS-Taiwan) - Chang Gung University, Taipei
Domain
Microbiology
Departement
Research Center for Emerging Viral Infections, Chang Gung University
Head
Prof. Shin-Ru Shih
Tutor
Prof. Shin-Ru Shih
Languages
English, Mandarin
Duration
4 weeks
Availability
Cities/Months Jan Feb Mar Apr May Jun Jul Augt Sep Oct Nov Dec
No No Yes Yes Yes No Yes Yes Yes Yes Yes Yes
Type of Research Project
- Basic science
What is the background of the project?
Adaptive mutations that have contributed to the emergence of influenza A pandemic (H1N1) 2009 virus, which can replicate and transmit among humans, remain unknown. We conducted a large-scale scanning of influenza protein sequences and identified amino acid?conserving positions that are specific to host species, called signatures. Of 47 signatures that separate avian viruses from human viruses by their nonglycoproteins, 8 were human-like in the pandemic (H1N1) 2009 virus. Close examination of their amino acid residues in the recent ancestral swine viruses of pandemic (H1N1) 2009 virus showed that 7 had already transitioned to human-like residues and only PA 356 retained an avian-like K; in pandemic (H1N1) 2009 virus, this residue changed into a human-like R. Signatures that separate swine viruses from human viruses were also present.
What is the aim of the project?
Continuous monitoring of these signatures in nonhuman species will help with influenza surveillance and with evaluation of the likelihood of further adaptation to humans.
What techniques and methods are used?
The techniques and methods applied in the study will include molecular cloning, primer design, RT-PCR, gene mutagenesis, cell culture, virus amplification, virus identification and titration, and reverse genetics.
What is the role of the student?
- The tasks will be done under supervision
What are the tasks expected to be accomplished by the student?
not provided
Will there be any theoretical teaching provided (preliminary readings, lectures, courses, seminars etc)
1
What is expected from the student at the end of the research exchange? What will be the general outcome of the student?
- No specific outcome is expected
What skills are required of the student? Is there any special knowledge or a certain level of studies needed?
Duration of project is 6-12 weeks. Student will need to pay for the stay exceeding 4 weeks, around 70 Euros per week.
For the use of students considering participating in the project, further information can be found from the following articles (please add specific articles):
1. Chen GW, Shih SR. Genomic signatures of influenza A pandemic (H1N1) 2009 virus. Emerg Infect Dis. 2009 Dec;15(12):1897-1903. doi: 10.3201/eid1512.090845.
2. Hsieh EF, Lin SJ, Mok CK, Chen GW, Huang CH, Wang YC, Chen TC, Chen CJ, Ojcius DM, Shih SR. Altered pathogenicity for seasonal influenza virus by single reassortment of the RNP genes derived from the 2009 pandemic influenza virus. J Infect Dis. 2011 Sep 15;204(6):864-72. doi: 10.1093/infdis/jir435.
3. Huang CH, Chen CJ, Yen CT, Yu CP, Huang PN, Kuo RL, Lin SJ, Chang CK, Shih SR. Caspase-1 Deficient Mice Are More Susceptible to Influenza A Virus Infection With PA Variation. J Infect Dis. 2013 Dec;208(11):1898-905. doi: 10.1093/infdis/jit381.
Are there any legal limitations in the student’s involvement
No
Hours
8
Type of students accepted
This project accepts:
- Medical students
- Graduated students (less than 6 months)
Articles
- 2013 Dec;208(11):1898-905. doi: {Caspase-1 Deficient Mice Are More Susceptible to Influenza A Virus Infection With PA Variation. J Infect Dis.}
- 2011 Sep 15;204(6):864-72. doi: {Altered pathogenicity for seasonal influenza virus by single reassortment of the RNP genes derived from the 2009 pandemic influenza virus. J Infect Dis. }
- 2009 Dec;15(12):1897-1903. doi: { Genomic signatures of influenza A pandemic (H1N1) 2009 virus. Emerg Infect Dis.}